GST · GST Return Filing & Compliance
Monthly & Quarterly GST Return Filing (GSTR-1, 3B, CMP-08)
GST return filing is not a year-end exercise.
Chartered Accountants · Chennai · Hyderabad · Bangalore · Dubai · Since 1986
GST return filing is not a year-end exercise. It is a monthly discipline — and the consequences of poor discipline are cumulative. A late GSTR-1 blocks your customers' input tax credit in their GSTR-2B. A delayed GSTR-3B attracts 18% annual interest from the due date. Mismatches between GSTR-1 and GSTR-3B invite department scrutiny. At PNPC Global, we have managed GST return portfolios for businesses across Chennai, Bangalore, Hyderabad, and Dubai since 2017. We do not just file returns. We reconcile your purchase register with GSTR-2B every month, catch supplier defaults before they affect your credit, and manage your QRMP elections at every threshold. Return filing without reconciliation is data entry. What we do is compliance.
What it costs
No hidden charges. The exact figure is set in your engagement letter.
Under the GST framework, every registered person is required to file periodic returns reporting outward supplies made, inward supplies received, and the net tax liability for each return period. The primary returns for regular taxpayers are GSTR-1 and GSTR-3B. GSTR-1 is the statement of outward supplies — it is the source of truth against which your buyers' ITC is auto-populated in GSTR-2B. GSTR-3B is the summary return where you declare net ITC, adjust it against output tax, and pay any balance. These two returns must be internally consistent with each other and with your books of accounts. Filing one without the other is not permitted — GSTR-3B cannot be filed if GSTR-1 for the same period is pending. Additionally, from 2023, the IFF (Invoice Furnishing Facility) and PMT-06 form the quarterly filer's analog under QRMP. GSTR-2B — generated by the GST system from your suppliers' GSTR-1 filings — is your auto-populated ITC statement that must be reconciled against your purchase register every return period.
Who must file GSTR-1 and GSTR-3B — and at what frequency
Every regular GST registrant with aggregate turnover above ₹5 crore — mandatory monthly filers (GSTR-1 by 11th, GSTR-3B by 20th of every month)
Regular registrants with aggregate turnover up to ₹5 crore who opt into or default to the QRMP scheme — quarterly GSTR-1 and GSTR-3B, with monthly tax payment via PMT-06 by the 25th
Businesses with zero supply in a month must still file a nil GSTR-3B — there is no automatic suspension for inactivity
Newly registered businesses — from the first tax period after registration, regardless of whether any supply was made
Businesses with input tax credit claims on purchases — ITC is not auto-credited; it must be claimed through GSTR-3B within the period specified
Exporters — GSTR-1 is the mandatory trigger for Letter of Undertaking (LUT)-based export refund claims and IGST refund on exports
Who files different returns instead
Composition Scheme taxpayers — file CMP-08 quarterly and GSTR-4 annually, not GSTR-1 or GSTR-3B
Input Service Distributors (ISD) — file GSTR-6, not GSTR-3B
Non-resident taxable persons — file GSTR-5 for the return period during which they operate
TDS deductors under Section 51 (government deductors) — file GSTR-7, not GSTR-3B
TCS collectors under Section 52 (e-commerce operators) — file GSTR-8
Note: the above are substitute returns, not exemptions from return filing — every registered person must file some return every period
| Feature | Monthly Filing (>₹5cr turnover) | QRMP Scheme (≤₹5cr turnover) | Nil Filer (zero activity period) |
|---|---|---|---|
| GSTR-1 frequency | Monthly — by 11th of following month | Quarterly — by 13th of month after quarter end | Monthly or Quarterly nil return — still mandatory |
| GSTR-3B frequency | Monthly — by 20th of following month | Quarterly — by 22nd or 24th of month after quarter (state-wise) | Nil GSTR-3B — by regular due date |
| Monthly tax payment mechanism | Within GSTR-3B itself | PMT-06 challan — by 25th of each of the first two months of the quarter | No payment required — nil filed |
| Invoice Furnishing Facility (IFF) | Not applicable — full GSTR-1 filed monthly | Optional — upload B2B invoices in months 1 and 2 of the quarter so buyers get GSTR-2B credit without waiting for quarterly GSTR-1 | Not applicable |
| ITC availability for buyers | Buyers see ITC in monthly GSTR-2B | B2B buyers see ITC monthly if IFF is used; else only quarterly | No ITC impact — no outward supply |
| Late fee for non-filing | ₹50/day (₹25 CGST + ₹25 SGST); ₹20/day for nil return | ₹50/day per quarter; ₹20/day for nil | ₹20/day (nil return) — non-filing even of nil return attracts fee |
| Interest on delayed tax payment | 18% p.a. from due date | 18% p.a. on PMT-06 and final GSTR-3B | Not applicable — no tax liability |
| Best suited for | Businesses with monthly volumes, B2B customers needing timely GSTR-2B credit, exporters | Small and medium B2C businesses with relatively stable monthly transactions | Seasonal businesses or those temporarily inactive — nil filing preserves registration |
QRMP scheme is opt-in at the start of each quarter — it is not automatic at ₹5 crore. If a business crosses ₹5 crore in a FY, it is migrated to monthly filing from the next FY. QRMP election or exit is done through the GST portal by the last day of the preceding quarter.
| # | Stage & What PNPC Does | CA Advice Portals Never Give | Frequency / Timeline |
|---|---|---|---|
| 1 | Purchase Register to GSTR-2B Reconciliation | Before GSTR-3B is filed, PNPC reconciles every invoice in your purchase register against the corresponding entry in GSTR-2B. ITC can only be claimed to the extent it appears in GSTR-2B (Rule 36(4) effective from 2022). If a supplier has not filed their GSTR-1, your ITC is blocked — not just delayed. We identify these suppliers and flag them for follow-up. | Monthly — by the 8th–10th of each month |
| 2 | Sales Register to GSTR-1 Reconciliation | GSTR-1 must exactly reflect every outward invoice — the GSTIN, HSN/SAC code, taxable value, GST rate, and whether it is B2B, B2C, export, or SEZ supply. PNPC maps your sales data to the correct GSTR-1 tables before upload. Wrong table classification (e.g., B2B filed as B2C) means your buyer's ITC does not appear in their GSTR-2B. | Monthly — GSTR-1 filed by the 10th (before the 11th deadline) |
| 3 | GSTR-3B Computation and Filing | GSTR-3B requires computing: total outward tax liability, eligible ITC from GSTR-2B, ITC reversals for ineligible items, net payable, and the breakdown by IGST, CGST, and SGST. PNPC prepares the computation, reconciles it against GSTR-1 data, reviews for ITC reversal obligations (Rule 42/43), and files GSTR-3B after client sign-off. | Monthly — by the 20th |
| 4 | Tax Payment via GST PMT Register | Tax must be deposited via challan into the Electronic Cash Ledger before or simultaneously with GSTR-3B — it cannot be paid after filing. PNPC calculates exact tax payable, generates the PMT-06 challan (for QRMP filers) or the payment challan for monthly filers, and confirms deposit before triggering the return filing. | Monthly — payment completed before 20th |
| 5 | ITC Reversal Tracking (Rule 42/43/37) | ITC used for exempt supplies must be reversed proportionally (Rule 42). ITC on capital goods must be tracked over the life of the asset (Rule 43). ITC on invoices unpaid for more than 180 days must be reversed (Rule 37) — and can be re-claimed when payment is made. PNPC tracks all three reversal categories as a standing monthly reconciliation item. | Monthly — incorporated into GSTR-3B computation |
| 6 | GSTR-1 vs GSTR-3B Internal Reconciliation | The GST department's automated scrutiny compares GSTR-1 and GSTR-3B every period. Tax declared in GSTR-3B must be at least equal to tax flowing from GSTR-1. An underdeclaration in GSTR-3B vs GSTR-1 triggers an automated demand notice (ASMT-10). PNPC reconciles the two returns before filing to prevent this. | Monthly — before both filings |
| 7 | Annual QRMP Assessment | At the start of each financial year, PNPC assesses whether the client's turnover and business profile justifies staying on QRMP or moving to monthly filing. For B2B-heavy businesses, the delayed GSTR-2B credit to buyers under QRMP can damage commercial relationships. The scheme is not always the right choice even if the turnover qualifies. | Annual — April of each year |
| 8 | Refund and Export Management | For exporters, GSTR-1 accuracy is the trigger for refund claims. IGST paid on exports is refunded based on GSTR-1 data matched against ICEGATE (customs data). Zero-rated supplies under LUT must be reported correctly in GSTR-1 Table 6A. PNPC manages export reporting and initiates refund applications through the GST portal. | As applicable each month |
PNPC manages the full monthly return cycle as a standing engagement — you do not chase us for deadlines. We build your return calendar, reconcile proactively, and file on time every period. Our engagements are structured as fixed-fee annual retainers so there are no per-return charges that incentivise cutting corners.
Sales register or invoice data — all outward invoices issued in the month, with GSTIN of B2B buyers, HSN/SAC codes, taxable value, GST rate, and supply type (intra-state, inter-state, export)
Purchase register or vendor invoices — all inward invoices with GSTIN of suppliers, invoice number, date, taxable value, and GST amounts
Credit notes and debit notes issued or received in the month
Advance receipts and corresponding invoices — GST is payable on advances received for future supplies
Bank statements for the month — used to cross-verify payment dates for 180-day ITC reversal tracking under Rule 37
Import invoices and ICEGATE data — for ITC on IGST paid at customs (IGST on imports flows through GSTR-2B separately)
GSTIN and GST portal login credentials (PNPC maintains access through authorised signatory DSC or OTP)
PAN of the entity — required to verify against GSTIN
HSN/SAC master for all products and services supplied — reviewed and mapped at onboarding
List of zero-rated supply categories — exports under LUT or with IGST payment
List of exempt supply categories — required for proportionate ITC reversal computation under Rule 42
Capital goods register — for Rule 43 ITC tracking over the life of capital assets
| Phase | Triggered By | PNPC CA Guidance | Risk If Ignored |
|---|---|---|---|
| Monthly Cycle — Weeks 1–2 | Month close (by 10th) | GSTR-2B downloaded and reconciled against purchase register; supplier default list generated; GSTR-1 data mapped and filed by 11th. | Buyers cannot claim ITC on your invoices if your GSTR-1 is filed late. B2B customers will stop purchasing or demand credit notes. |
| Monthly Cycle — Weeks 2–3 | GSTR-1 filed (by 20th) | GSTR-3B computed with ITC from GSTR-2B, ITC reversals applied, tax payable confirmed, challan generated, GSTR-3B filed. | 18% p.a. interest on delayed tax payment. ₹50/day late fee. Automated demand if 3B liability < 1 liability. |
| Quarterly (QRMP) | Quarter close | PMT-06 challan in months 1 and 2; IFF optional upload for B2B invoices; quarterly GSTR-1 and GSTR-3B filed after quarter end. | PMT-06 delay triggers interest on the full quarter's tax from Month 1 due date. Buyers lack monthly GSTR-2B credit. |
| Annual Reconciliation (pre-GSTR-9) | Before 31 December | Full-year GSTR-1 vs GSTR-3B vs books reconciliation. Differences investigated and corrected in pending return periods or through DRC-03 payment. Basis for GSTR-9 preparation. | Unexplained differences in GSTR-9 invite audit scrutiny. Year-end corrections require interest payments if tax was underpaid. |
| ASMT-10 / DRC-01 Scrutiny | Department auto-scrutiny | PNPC analyses the demand notice, quantifies the difference, responds with technical submissions, and settles or contests as appropriate. | Unanswered notices escalate to demand orders. Default assessment can be made if no response. |
| Refund Claims | Exporters or inverted duty structure | GSTR-1 accuracy verified. Refund application RFD-01 filed on GST portal. Supporting documents compiled. Officer queries responded to. | Delayed or incorrect refund filing results in working capital locked in ITC ledger. Time limit is 2 years from relevant date. |
| Change in Turnover (QRMP/Monthly threshold) | Crossing ₹5 crore in a FY | PNPC migrates filing frequency to monthly from the following April. Return calendar updated. PMT-06 mechanism discontinued. | Continuing quarterly filing after turnover exceeds ₹5 crore in the prior FY constitutes non-compliance. |
What exactly is GSTR-2B — and why does it matter more than GSTR-2A?
GSTR-2B is a static, auto-populated ITC statement generated on the 14th of every month, showing ITC available based on suppliers' GSTR-1 filings cut off on the 13th. Unlike GSTR-2A (which is dynamic and updates as suppliers file late), GSTR-2B is fixed for each return period. From 2022 onwards, Rule 36(4) effectively limits ITC claims to what appears in GSTR-2B — you cannot claim ITC that your supplier has not reported in their GSTR-1 for the corresponding period. This means your ITC entitlement depends on your suppliers filing on time.
What happens if I file GSTR-1 on time but do not pay the tax in GSTR-3B?
GSTR-1 and GSTR-3B are separate filings. Filing GSTR-1 on time creates the ITC trail for your buyers but does not discharge your own tax liability. Tax liability is only discharged when GSTR-3B is filed and the payment is made. Interest at 18% per annum accrues on the unpaid tax from the due date of GSTR-3B — which is the 20th of the following month. Late fees accrue separately. The GST system calculates and shows interest automatically — it cannot be waived except through litigation or amnesty schemes.
My supplier filed their GSTR-1 late and my ITC is blocked. Can I claim it next month?
Yes. ITC blocked because of a supplier's late GSTR-1 filing does not disappear — it becomes available in the GSTR-2B for the period in which the supplier actually files. You can claim the ITC in the GSTR-3B for that later period, subject to the annual time limit: ITC must be claimed by the earlier of the due date for the GSTR-3B of November following the end of the FY, or the due date for filing the annual return for the FY. ITC not claimed within this window is permanently lost.
What is QRMP and should my business opt into it?
QRMP — Quarterly Return Monthly Payment — allows businesses with aggregate turnover up to ₹5 crore to file GSTR-1 and GSTR-3B quarterly instead of monthly. Tax must still be paid monthly via PMT-06 challan — by the 25th of each of the first two months of the quarter. The Invoice Furnishing Facility (IFF) allows B2B invoice uploads in months 1 and 2 so buyers can access GSTR-2B credit without waiting for the quarterly GSTR-1. QRMP reduces the total number of annual returns filed but does not reduce the monthly tax payment obligation.
What is the late fee for missing the GSTR-3B deadline?
For regular taxpayers: ₹50 per day (₹25 CGST + ₹25 SGST) per return, subject to a maximum cap linked to turnover. For nil returns: ₹20 per day (₹10 CGST + ₹10 SGST). The GST Council has intermittently reduced late fees through amnesty schemes, but these are not recurring and cannot be relied upon. Late fees are in addition to 18% annual interest on any unpaid tax. A return filed 30 days late on a nil return costs ₹600 in late fees. A return filed 30 days late with ₹1 lakh tax liability costs ₹1,500 in late fees plus approximately ₹1,480 in interest.
I received an ASMT-10 notice from the GST department. What is this?
ASMT-10 is a notice for scrutiny of returns issued under Section 61 of the CGST Act. The department's system flags discrepancies between your GSTR-1 and GSTR-3B, between your GSTR-3B and GSTR-2B, or between your returns and third-party data from sources like TRACES or customs. The notice specifies the discrepancy and asks you to either accept the liability or explain the difference within 30 days. If you accept, you pay via DRC-03. If you explain, the department either accepts your explanation and closes the matter under ASMT-11, or escalates to a show-cause notice.
Can I amend a GSTR-1 after it is filed?
Yes. Amendments to GSTR-1 are made in the subsequent month's GSTR-1 through the amendment tables. B2B invoice amendments go in Table 9A (original document), 9B (revised document), or 9C (debit/credit notes). The amendment affects the buyer's GSTR-2B in the period the amendment is filed — not retrospectively in the original period. There is no separate amendment return; amendments are part of the next month's GSTR-1 itself.
What is ITC reversal under Rule 37 — and how does PNPC track it?
Rule 37 requires that ITC claimed on an inward supply must be reversed if the corresponding payment to the supplier is not made within 180 days from the invoice date. The reversal is added back to the output tax liability in GSTR-3B for the period in which the 180-day limit expires. When the supplier is subsequently paid, the ITC can be re-claimed. This applies to all business purchases — not just large capital items.
My business has one GSTIN in Tamil Nadu and one in Karnataka. Do I file separate returns for each?
Yes. Each GSTIN is a separate taxpayer in the GST system. GSTR-1 and GSTR-3B must be filed independently for each GSTIN, for each return period. The ITC ledger, tax ledger, and return history are all GSTIN-specific. There is no consolidated multi-state filing mechanism. If you have 3 state registrations, you file 3 sets of GSTR-1 and GSTR-3B every month — and 3 GSTR-9s every year.
What is the GST PMT-06 challan under QRMP — and when must it be paid?
PMT-06 is the payment challan that QRMP scheme taxpayers use to pay monthly tax in the first two months of each quarter. It is not a return — no return is filed in those months. The challan is due by the 25th of each of the first two months of the quarter (e.g., for the Jul-Sep quarter: PMT-06 by 25 July and 25 August). The tax payment can be based on 35% of the previous quarter's tax paid, or the actual tax liability for the current month calculated by the taxpayer, or the balance in the Electronic Cash Ledger. The final quarter-end GSTR-3B true-ups or refunds the monthly PMT-06 payments.
Can I file a GST return without a DSC — using OTP instead?
For proprietorships and partnership firms, returns can be filed using Aadhaar-based EVC (OTP). For companies and LLPs, returns must be filed using a Class 3 DSC of the authorised signatory. There is no OTP-based filing option for companies and LLPs. If the authorised signatory's DSC expires or the signatory changes, the DSC must be updated and re-registered on the GST portal before any further returns can be filed. A lapse in DSC currency can delay return filing and trigger late fees.
What is the difference between GSTR-1 filed data and e-invoices — are they the same?
For businesses above the e-invoice threshold (currently ₹5 crore aggregate turnover), B2B invoices must be registered on the Invoice Registration Portal (IRP) to generate an IRN (Invoice Reference Number) and QR code. The IRP then auto-pushes the invoice data to GSTR-1 — so the GSTR-1 entries are auto-populated from e-invoices rather than manually uploaded. However, B2C invoices, credit notes, debit notes, and certain other documents are not covered by e-invoicing and must still be reported separately in GSTR-1. Not all invoice types are auto-populated; manual data entry remains necessary for non-e-invoice documents.
What is the annual turnover limit for e-invoicing — and when does it apply to my business?
E-invoicing is currently mandatory for registered taxpayers with aggregate turnover exceeding ₹5 crore in any preceding financial year. The threshold has been progressively reduced since 2020 (from ₹500 crore, to ₹100 crore, to ₹50 crore, to ₹20 crore, to ₹10 crore, to ₹5 crore as of August 2023). If your turnover crosses ₹5 crore in any FY, you become a mandatory e-invoicer from the subsequent FY. Certain sectors are exempt from e-invoicing regardless of turnover: banking, insurance, NBFCs, GTA (Goods Transport Agencies), passenger transport, and multiplex cinemas.
What happens to ITC on a supplier who later gets their GST registration cancelled?
If your supplier's GST registration is cancelled retrospectively — which the department can do in fraud cases — any ITC claimed on invoices from that supplier during the cancelled period becomes potentially reversible, even if you claimed it in good faith. Section 16(2)(c) requires that the tax charged by the supplier must actually have been paid to the government. If the supplier never remitted the tax, your ITC claim is technically invalid even though you paid the supplier and the invoice appeared in GSTR-2B. This is an area of active litigation before multiple High Courts.
| Feature | Self-Filing / Data Entry Service | PNPC Global |
|---|---|---|
| GSTR-2B Reconciliation | Not done — ITC claimed from purchase bills regardless of GSTR-2B | Full purchase register vs GSTR-2B reconciliation every month before GSTR-3B is filed |
| ITC Reversal Tracking (Rules 37, 42, 43) | Not tracked | Systematic monthly tracking of 180-day rule, exempt-supply reversals, and capital goods ITC amortisation |
| GSTR-1 vs GSTR-3B Cross-Check | Filed independently without reconciliation | Both returns reconciled before filing to prevent automated ASMT-10 notices |
| Late Filing Risk | Dependent on client providing data on time | PNPC initiates data collection 10 days before due date; returns filed before deadline |
| QRMP Assessment | Scheme selected once, never reviewed | Annual QRMP vs monthly assessment; IFF usage strategy for B2B clients |
| Multi-GSTIN Management | Each GSTIN filed separately, no coordination | Unified filing calendar and cross-GSTIN reconciliation under one engagement |
| Export Refund Management | Not included | GSTR-1 export tables reviewed; RFD-01 refund application managed |
| Notice / Scrutiny Response | Not included | PNPC represents clients before GST officers; ASMT-10 and DRC-01 responses handled |
What the PNPC package includes
- 01
Monthly GSTR-2B download and reconciliation against purchase register
- 02
Supplier default tracking and follow-up advisory
- 03
GSTR-1 data mapping and filing by the 11th of each month
- 04
GSTR-3B computation — ITC, reversals (Rules 37/42/43), net tax payable
- 05
Tax challan generation and payment confirmation before GSTR-3B filing
- 06
GSTR-3B filing by the 20th of each month
- 07
QRMP PMT-06 challan management for quarterly scheme clients
- 08
E-invoice compliance advisory and GSTR-1 completeness review
- 09
Annual GSTR-1 vs GSTR-3B vs books reconciliation as GSTR-9 preparation
- 10
Notice and scrutiny response — ASMT-10, DRC-01 handling
- 11
Multi-GSTIN coordination for multi-state operations
- 12
Direct CA contact — by phone and WhatsApp for GST queries
Speak directly with a PNPC Chartered Accountant. Not a return-filing portal. Not an automated reminder service. A practising CA who manages your full GST compliance cycle — reconciliation, filings, notices, and everything in between.
Jurisdictions
Chennai · Bangalore · Hyderabad
Dubai · Al Karama
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